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Ignore this I have found a workaround.
OSOT - Used VMWare's Template using command line within MDT for deployment this removed most of the unwanted applications that come with Windows 10 and allowed me to keep simple applications such as calculator, sticky notes and others.
Group Policy to disable the Windows Store.
I also wanted to keep a default start menu which users could change to the way they wanted so I have produced an export using powershell of the start menu and then in MDT use Powershell to import to the default profile on creation. This allows me to change the start menu simply by changing out the XML file MDT.