IT'S ALIVE!
Ok, so...
I was tinkering with this and i finally got it working. I looked in the directory /hyperic-hq-agent-3.x.x/pdk/plugins and I didn't see the tomcat-plugin.xml in there. Originally I put the tomcat-plugin.xml on the server in the plugins directory I have there. By putting the tomcat-plugin.xml on the server in the plugins directory, it allowed for me to choose it from the list of servers to monitor.
Sitting here, I thought, "Let me try putting it in /hyperic-hq-agent-3.0.3/pdk/plugins" and I did. I then restarted the hyperic agent on the machine I am trying to monitor Tomcat 6.0 on. A few minutes later it popped up in Autodiscovery on the Dashboard and then turned green!
So I guess that was the problem.