Having a simpler solution would be wonderful. Are there any examples of how to create an entry point that can accept runtime parameters?
[EDIT]
Have learned that entry point exe's can handle parameters just like standard exe's. That was not initially clear from any of the ThinApp documentation. I am working on a much simpler solution that incorporates that and forgoing a script to create a file during the startup but instead using a file on the physical drive. For now I am creating the folder structure and file manually but if anyone has any idea how to possibly create the phyisical folder during the MSI installation, that might be nice.