There is a whole section on upgrading Update Manager, vCenter, and ESX, all to 4.0. There is a large hands-on lab where all those upgrades are performed, along with updating a VMs virtual hardware and VMware Tools.
From your list, vApps are covered in What's New. There's nothing on vShield Zones, or Data Protection, and vCloud is a concept, rather than a specific piece of technology.
Scott.
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See http://www.globalknowledge.co.uk for official VI3 and vSphere 4 training
See http://vmwaretraining.blogspot.com for my blog on VMware training and certification
See for some twittering
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