Could be a conflicting Onedrive issue when items are removed from all your synced devices.

Which Onedrive and Workstation version do you use? Afaik the cloud storage product Onedrive got a new x64 client with a per-machine installation option.

Do you use VMware Workstation with shared folder?

Did you separate the working directory to a non-Onedrive Sync location and the virtual machine directory in VMware Workstation?