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This system (Visionman RSX-2ISC10 1U Rackmount Server) is claimed by the vendor (Tigerdirect) to use the X7DVL-E motherboard:
From their site:
Dual Onboard RAID Controllers
Whether you’re running in a Windows or Linux environment, there is a
RAID controller onboard that will support your server deployment. For
RAID levels 0,1, and 5 in a Windows environment, the included Intel
Matrix Storage controller is currently the best onboard RAID controller
available. For those in a Linux environment, the LSI Logic onboard RAID
controller offer RAID levels of 0,1, and 10.
It sounds like you may want to be using the LSI logic RAID controller instead of the Intel. The LSI lacks RAID5 (which the Intel Matrix offers) but it sounds like you aren't trying to use RAID 5 anyway.