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Since the VMkernel's processes are always bound to core 0, I'd suggest upgrading drivers and firmware of your hardware to the newest possible and if that doesn't help, open a ticket with the vendor. This is definitely not a normal nor a healthy behavior for your hypervisor. Good luck!
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I dabble in vSphere troubleshooting, PowerCLI scripting and NetApp storage - and I share my journeys at http://vmxp.wordpress.com/