I have setup a seperate drive for all of my captures to be placed.
How can I make it so everytime I run ThinApp that it automatically uses that location (E:\) instead of the default location (C:\Program Files\VMware\VMware ThinApp\Captures\)?
From my experience it actually creates capture folder in the current working directory, i.e. from where you have launched setup capture, I can check whether it can be altered but menwhile you may try following:
Create a shortcut to setup capture exe, right click properties on shortcut, specify start in as e: (or what ever is your target folder), Launch it to see if it works.
Changing the "Start In" location didn't fix it. But I re-installed ThinApp to the E drive so now everythign goes to E:\VMWare ThinApp\Captures which will work for me.