There is no tool like checkdisk for VMFS - there are only tools to check consistency but nothing that will help to fix problems.
Try to run
vmkfstools -i "existing.vmdk" "new.vmdk"
if you can do that without errors the new.vmdk ca be regarded as ok.
If a clone via vmkfstools is not possible - try to create a clone from inside the VM. Tools that can do that are for example VMware Converter, ddrescue,ghost ...
If this VM displays the error warning occasionally I would like to see a vmware.log from a run when the message was displayed
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Do you need support with a VMFS recovery problem ? - send a message via skype "sanbarrow"
I do not support Workstation 16 at this time ...