You can use global entitlements to entitle users and groups to desktops and applications in a Cloud Pod Architecture environment. Please refer the link for more info: Documentation for VMware Horizon 7 version 7.0
Not only does this not answer my question it's also a terrible response. Did you even read the questions??
For anyone else interested, I have discussed this with BCS and they confirmed it is a bug. They have a feature request in for a way to manually adjust the order but no ETA.